Supersplat
Manual
| Options: | ||
|---|---|---|
| -r | Fasta-formatted reference file (Required) | |
| -f | Fasta-formatted reads file (Required) | |
| -c | Minimum read chunk size - must be greater than 3 (Required) | |
| -n | Minimum intron size - must be greater than 0 (Required) | |
| -x | Maximum intron size - must be greater than minimum intron size (Required) | |
| -i | Maximum index chunk size - must be greater than minimum read chunk size (Optional, default 12) | |
| -o | 0 for all results, 1 for only canonical results (Optional, default 0) | |
| -s | Number of references to index simultaneously, 0 for all at once (Optional, default 1) | |
| -e | Extension to add to output file (Optional, default .SuperSplat) |